Jump label

Service navigation

Main navigation

You are here:

Main content

Semiflexible polymers and cytoskeletal filaments

Semiflexible polymers are governed by their bending energy in contrast to flexible polymers, which are governed by entropic tension. Whereas typical synthetic polymers have diameters in the nm-range and are connected by carbon-carbon backbone, which is very flexible, many biopolymers - such as DNA, cytoskeletal filaments (F-actin and microtubules), protein fibers - are relatively large and thick molecules which leads to considerable bending rigidity. The bending rigidity of a polymer can be characterized by its persistence length, which is the ratio of the bending rigidity κ of the polymer and the thermal energy: Lp=κ/kBT. It can be visualized as the typical length scale over which a thermally fluctuating semiflexible polymer changes its orientation; fragments smaller than the persistence length essentially behave as rigid rods. Typical persistence lengths are 50nm for DNA (mechanical contribution, electrostatics increases the stiffness), 10μm for F-actin, or several mm for microtubules.

The thermal fluctuations of a single semiflexible polymer are visualized in this Java Applet of a Monte Carlo simulation.

The reason for a large bending rigidity often is (according to isotropic elasticity theory) the "thickness" of a polymer. Therefore, semiflexible polymers are typically "thick", which makes them suitable for single polymer manipulation and observation. The theoretical description of such single polymer experiments is an important research area.

Another fascinating aspect of the cytoskeletal filaments F-actin and microtubules is their dynamic polymerization behavior which is fueled by the hydrolysis of ATP or GTP. This chemically driven polymerization dynamics provides the basis for cellular force generation and motion and allows for a constant remodelling and, thus, shape changes of the cytoskeleton. This property makes the difference between "dead" synthetic polymers and polymers, which provide the basis for active motion - a basic feature of living matter.

Our research spans from the polymer physics of single semiflexible polymers to structures containing many interacting polymers and from polymers in equilibrium to "living" cytoskeletal polymers with a chemically driven polymerization dynamics:

 

Single Semiflexible Polymers

The bending rigidity of semiflexible polymers gives rise to some interesting new polymer physics because thermal fluctuations, external forces, or fluctuations in a random potential are also competing with the bending energy. In "conventional" flexible synthetic polymers there would only be competition with the entropic elasticity of a flexible chain.

This has consequences, for example, if semiflexible polymers adsorb on structured curved substrates, where adsorption then also involves bending energy.

Because many semiflexible polymers are quite "large and thick" (as compared to a typical synthetic polymer), such as cytoskeletal filaments (F-actin, microtubules) or DNA, they are often well suited to be observed and manipulated on a single molecule level. In order to interpret such experiments quantitatively, detailed theoretical models are helpful. Examples are the analysis of thermal fluctuations of single polymers in straight or curved microchannels, the forced desorption from an adhesive substrate, or the dynamic behavior if a polymers is driven over a surface with potential or topographic barriers.

Finally, the fluctuation behavior of semiflexible polymers can provide interesting statistical physics connecting very different problems. For directed lines there exists a mapping from the problem of a single line in a random potential onto the so-called Kardar-Parisi-Zhang (KPZ) equation, which is a very important non-linear equation describing surface growth and whose dynamic critical properties are still not completely clear. We have studied this mapping for stiff lines, which gives some new insight into the problem.

References:

Bundles and networks of filaments

In the cytoskeleton of a cell F-actin filaments typically forms bundle or network structures which are hold together by crosslinkers with two "sticky" ends. Here, we studied the question, how semiflexible polymers bundle or unbundle from a statistical physics view point. We found that the bundling transition is discontinuous and, thus, rather sharp for stiff polymers.

Moreover, the adhesive energy that is gained in forming a bundle can also be used to exert pushing or zipping forces onto obstacles.

We also investigated networks of semiflexible polymers with respect to wrinkle formation.

References:

Polymerization kinetics

Cytoskeletal filaments are constantly polymerizing and depolymerizing within the cell. The polymerization dynamics is also chemically driven because ATP (F-actin) or GTP (microtubules) is hydrolyzed within a filament.

An additional aspect in microtubule polymerization dynamics is their dynamical instability, i.e., the occurence of catastrophes, where the microtubule switches stochastically from a growing state into a state of rapid depolymerization, and rescue events, where it switches back to growth. Catastrophes are associated with a loss of the GTP-cap, which stabilizes the microtubule structure mechanically. The dynamic instability has interesting consequences for their ability to generate pushing forces, which becomes limited by catastrophes. It also leads to characteristic collective catastrophes or rescue events if many microtubules cooperate in pushing an obstacle.

References

Interaction with molecular motors (gliding assays)

Cytoskeletal filaments also serve as tracks for molecular motor proteins. In gliding assays the motor proteins are immobilized on a surface and pull filaments over the surface. Such gliding assays can be used to study the stepping behavior of single motors, the competittion between different motor types (for exmaple slow and fast motors) transporting a filament, or collective effects from interactions between filaments.

References

Reviews